PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g09900.3
Common NameLR48_Vigan09g113100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 164aa    MW: 18066.3 Da    PI: 9.0485
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g09900.3genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.8e-182878255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     y+GVr+++ +g+++AeIrd +    +  r++lg+f++ae Aa a+++a+ +++g
  Vang06g09900.3 28 SYRGVRRRP-WGKFAAEIRDSTR---HgMRVWLGTFDSAEAAALAYDQAAFSMRG 78
                    69*******.**********422...25*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.21E-182788No hitNo description
SMARTSM003803.4E-352892IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-222888IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-302886IPR001471AP2/ERF domain
PfamPF008479.2E-142878IPR001471AP2/ERF domain
PROSITE profilePS5103223.2752886IPR001471AP2/ERF domain
PRINTSPR003672.5E-102940IPR001471AP2/ERF domain
PRINTSPR003672.5E-105268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0009873Biological Processethylene-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MIAGATTVDR AADRAGSEES EAVQKEKSYR GVRRRPWGKF AAEIRDSTRH GMRVWLGTFD  60
SAEAAALAYD QAAFSMRGPA AILNFPVDIV RESLREMNYT VDSNEEGCSP VVALKRKHSL  120
RRKIGVKKNN KQSSVDNAVV FEDLGPDYLE QLLMSSDRIP SSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A6e-282589266ATERF1
2gcc_A6e-282589266ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00374DAPTransfer from AT3G23240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014512457.11e-115PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotQ8LDC89e-62ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLA0A0L9VC421e-118A0A0L9VC42_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SPE61e-117A0A0S3SPE6_PHAAN; Uncharacterized protein
STRINGGLYMA20G34570.11e-86(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.12e-53ethylene response factor 1
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]